PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g08988.1.p
Common NameBRADI_2g17615
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 646aa    MW: 74892.1 Da    PI: 7.5751
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g08988.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.84.2e-2428127190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                       +fY++YA++vGFsvr+ ++++   ++ +++r+f C k+g+r++++++            ++k+ + r+ tr+gC+a+++vk++kdgk+ v+ +
  Bradi4g08988.1.p  28 EFYKAYAHNVGFSVRIGQKRTV--DNVVVWRRFLCGKSGFRRNNEEEpkkelngekkgdEKKRTHARKITRCGCEAMITVKRMKDGKYAVSYF 118
                       6****************99888..889****************999999*******9977788889*************************** PP

              FAR1  82 eleHnHela 90 
                       ++eH+He++
  Bradi4g08988.1.p 119 HEEHTHEFV 127
                       *******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-2128127IPR004330FAR1 DNA binding domain
PfamPF105519.0E-30249341IPR018289MULE transposase domain
PROSITE profilePS5096610.67530566IPR007527Zinc finger, SWIM-type
SMARTSM005754.6E-6541568IPR006564Zinc finger, PMZ-type
PfamPF044341.3E-4541562IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
ASSCTPECDE NLKPAVGMAF DNMEEVEEFY KAYAHNVGFS VRIGQKRTVD NVVVWRRFLC  60
GKSGFRRNNE EEPKKELNGE KKGDEKKRTH ARKITRCGCE AMITVKRMKD GKYAVSYFHE  120
EHTHEFVTPR KQHLIKSNRQ VSDKAKDTLF TCHAASIGTA GAFRLLRVGE GGFEFVGCTK  180
RDLQNYHRDM RSTFKDSDAQ MFIDNLRKRQ EINPGFFFEY VLDDKNWLTH VFWADACCRK  240
NYALFGEMVS FDSTYSTNQY SMIFCPFTGI NHHMASVFYG AALIVNETIE SYKWVFQTFL  300
KAMDGAAPRL IVTDEDQSMK IAIEDVMHNT VHRLCMWHIM RKLPEKVGPP LREDEHFYST  360
INSCVWGSEN PTEFEAKWSS MISEFGLEDN TWFSRRYELH ESWIPAYFRG VFLGEILRTT  420
SRSESANSFF NHFIGYKHAL VEFWIRIGTA LEEQRQNELK AGHECLNSMP PLITSWEIEK  480
HASLFFTHAF FSSFQKEVRA SRDHCLIENI SQEGDVRTTI IGGARSFKSR EVQFNTTSKS  540
ARCSCMLFET RGIPCRHIIM VLRGAKMSEL PSHFILDRWK KTVNRRVVYD SSGNLLEENE  600
SSSLDLAKRK MVSEIHQTLD DTIRLAEQSP EELEALRNLL VDMKRN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18589KKRTH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467387.10.0hypothetical protein SORBIDRAFT_01g026910
TrEMBLA0A0Q3ML870.0A0A0Q3ML87_BRADI; Uncharacterized protein (Fragment)
STRINGLOC_Os02g44790.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-119FAR1-related sequence 5